GGEbiplot Pattern Explorer

Complete solution to biplot analysis, video game for scientists


Functionality

GGEbiplot functions

Functions for a 4-Way Dataset

Variable-by-Variable Biplot

Association Biplot

Genotype by env. biplot

Genotype by trait biplot

QTL mapping biplot

QTL by environment biplot

Gene expression biplot

Diallel cross data biplot

Host by pathogen biplot

3D-Biplot

Free User-friendly ANOVA

Breeder's Kit

 

 

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Biplot Analysis Instructions

GGEbiplot Beta download

GGEbiplot License

Biplot Analysis Presentations

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GGE biplot publications by users

GGE biplot publications

References on biplot analysis

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3D Biplot Viewer


Download 3D biplot viewer beta

While it is our belief that in most cases a 2D biplot is sufficient to visualize a two-way dataset and to understand the main patterns contained in it, it is always more desirable to look at an additional axis to make sure no important patterns are missed.

So why 3D biplots are not used as often as it should be? This is because it is difficult for the human mind to appreciate a 3D biplot on a 2D paper. A static 3D biplot printed on 2D paper often obscures the pattern rather than makes it clearer.

Now "3D biplot viewer" is available to assist you visualize your data through a 3D biplot. The following is a snapshot of a rotating 3D biplot:

As you can see from this snapshot, the 3D biplot viewer allows you to do the following:

  • Visualize a constantly rotating 3D biplot. This allows you to look at the biplot from all possible perspectives;
  • Adjust the rotating speed;
  • Stop the rotation and thereby freeze the image when you see interesting patterns;
  • Rotate any of the three axes while hold the other two;
  • Visualize all possible 2D biplots (PC1 vs PC2, PC1 vs PC3, and PC2 vs PC3);
  • Save the current view of the 3D biplot into a graphic file, in color or in black-white, for publication purposes;
  • Open and visualize any 3D data from the menu bar.

The power of the 3D biplot viewer will be greatest when it is coupled with the GGEbiplot software, as GGEbiplot allows the choice among all possible multiplicative models, among three singular value partitioning methods, and for any subset of the two-way table. It also has many options to label your entries (subjects) and testers (variables). From a 2D-biplot of GGEbiplot to a rotating 3D biplot is just one mouse-click away.

 


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